The American College of Surgeons Health Policy Research Institute

American College of Surgeons Health Policy Research Institute
Advancing Health Policy Information
for Surgery in the United States

How CDC Tracks Antifungal Resistance

Fungal disease · resistance surveillance

Antifungal resistance is organism-, drug-, specimen- and setting-specific. CDC surveillance can reveal important patterns, but a finding for one Candida species or healthcare network should not be generalized to all fungal infections.

Editorial status: independent source analysis; see the research contributor directory.Source retrieved August 27, 2026

Resistance findings need organism precision

CDC’s current candidiasis overview describes increasing drug resistance among invasive Candida infections and emphasizes laboratory testing. It identifies Candida auris, Candida glabrata and Candida parapsilosis as important species in the resistance discussion, with different patterns and evidence.

Those distinctions matter because “Candida” is not one uniform organism and superficial disease is not the same as invasive infection. A patient-facing fluconazole evaluation and prescription pathway belongs to outpatient clinical assessment; it should not be conflated with invasive-resistance surveillance. A statistic from bloodstream surveillance should not be applied to an untested skin, oral or vaginal condition.

Even within one species, results can differ across antifungal classes. A report should name the tested agent rather than say an isolate is simply “drug resistant,” and it should distinguish resistance to one class from multidrug or pan-resistant definitions.

How the surveillance source changes interpretation

The AR Laboratory Network performs identification and antifungal susceptibility testing, but CDC says its submissions form a convenience sample influenced by testing priorities, methods, volume and jurisdictional rules. Year-to-year changes may therefore reflect both biology and surveillance operations.

Do not build a national rate from a convenience sample

Report the number tested, organism, antifungal, breakpoint method, years and network limitations. A detection percentage is not automatically a population incidence estimate.

A six-part evidence card

  1. Species and current accepted name
  2. Clinical, screening or outbreak specimen type
  3. Antifungal class and individual agent tested
  4. Susceptibility method and breakpoint source
  5. Testing network, geography and years included
  6. Numerator, denominator and missing-data limits

What surveillance cannot decide

Population and laboratory-network data cannot diagnose a person or select an antifungal. Identification and susceptibility testing require appropriate specimens and qualified interpretation. The newsroom should not recommend treatment or imply that a named medicine will work for an untested infection.

Facility outbreak findings also require infection-control context and should not be generalized to community prevalence without a matching surveillance source.

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